Genome-Wide Identification of Calcium Dependent Protein Kinase Gene Family in Plant Lineage Shows Presence of Novel D-x-D and D-E-L Motifs in EF-Hand Domain
Identifieur interne : 000627 ( Main/Exploration ); précédent : 000626; suivant : 000628Genome-Wide Identification of Calcium Dependent Protein Kinase Gene Family in Plant Lineage Shows Presence of Novel D-x-D and D-E-L Motifs in EF-Hand Domain
Auteurs : Tapan K. Mohanta [Corée du Sud] ; Nibedita Mohanta [Inde] ; Yugal K. Mohanta [Inde] ; Hanhong Bae [Corée du Sud]Source :
- Frontiers in Plant Science [ 1664-462X ] ; 2015.
Abstract
Calcium ions are considered ubiquitous second messengers in eukaryotic signal transduction pathways. Intracellular Ca2+ concentration are modulated by various signals such as hormones and biotic and abiotic stresses. Modulation of Ca2+ ion leads to stimulation of calcium dependent protein kinase genes (
Url:
DOI: 10.3389/fpls.2015.01146
PubMed: 26734045
PubMed Central: 4690006
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genome-Wide Identification of Calcium Dependent Protein Kinase Gene Family in Plant Lineage Shows Presence of Novel D-x-D and D-E-L Motifs in EF-Hand Domain</title><author><name sortKey="Mohanta, Tapan K" sort="Mohanta, Tapan K" uniqKey="Mohanta T" first="Tapan K." last="Mohanta">Tapan K. Mohanta</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>School of Biotechnology, Yeungnam University</institution><country>Gyeongsan, South Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Mohanta, Nibedita" sort="Mohanta, Nibedita" uniqKey="Mohanta N" first="Nibedita" last="Mohanta">Nibedita Mohanta</name><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Department Of Biotechnology, North Orissa University</institution><country>Baripada, India</country></nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Mohanta, Yugal K" sort="Mohanta, Yugal K" uniqKey="Mohanta Y" first="Yugal K." last="Mohanta">Yugal K. Mohanta</name><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>Department Of Botany, North Orissa University</institution><country>Baripada, India</country></nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Bae, Hanhong" sort="Bae, Hanhong" uniqKey="Bae H" first="Hanhong" last="Bae">Hanhong Bae</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>School of Biotechnology, Yeungnam University</institution><country>Gyeongsan, South Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">26734045</idno><idno type="pmc">4690006</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4690006</idno><idno type="RBID">PMC:4690006</idno><idno type="doi">10.3389/fpls.2015.01146</idno><date when="2015">2015</date><idno type="wicri:Area/Pmc/Corpus">000097</idno><idno type="wicri:Area/Pmc/Curation">000097</idno><idno type="wicri:Area/Pmc/Checkpoint">000491</idno><idno type="wicri:Area/Ncbi/Merge">001E50</idno><idno type="wicri:Area/Ncbi/Curation">001E50</idno><idno type="wicri:Area/Ncbi/Checkpoint">001E50</idno><idno type="wicri:Area/Main/Merge">000627</idno><idno type="wicri:Area/Main/Curation">000627</idno><idno type="wicri:Area/Main/Exploration">000627</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Genome-Wide Identification of Calcium Dependent Protein Kinase Gene Family in Plant Lineage Shows Presence of Novel D-x-D and D-E-L Motifs in EF-Hand Domain</title><author><name sortKey="Mohanta, Tapan K" sort="Mohanta, Tapan K" uniqKey="Mohanta T" first="Tapan K." last="Mohanta">Tapan K. Mohanta</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>School of Biotechnology, Yeungnam University</institution><country>Gyeongsan, South Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Mohanta, Nibedita" sort="Mohanta, Nibedita" uniqKey="Mohanta N" first="Nibedita" last="Mohanta">Nibedita Mohanta</name><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Department Of Biotechnology, North Orissa University</institution><country>Baripada, India</country></nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Mohanta, Yugal K" sort="Mohanta, Yugal K" uniqKey="Mohanta Y" first="Yugal K." last="Mohanta">Yugal K. Mohanta</name><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>Department Of Botany, North Orissa University</institution><country>Baripada, India</country></nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Bae, Hanhong" sort="Bae, Hanhong" uniqKey="Bae H" first="Hanhong" last="Bae">Hanhong Bae</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>School of Biotechnology, Yeungnam University</institution><country>Gyeongsan, South Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author></analytic><series><title level="j">Frontiers in Plant Science</title><idno type="eISSN">1664-462X</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Calcium ions are considered ubiquitous second messengers in eukaryotic signal transduction pathways. Intracellular Ca<sup>2+</sup> concentration are modulated by various signals such as hormones and biotic and abiotic stresses. Modulation of Ca<sup>2+</sup> ion leads to stimulation of calcium dependent protein kinase genes (<italic>CPKs</italic>), which results in regulation of gene expression and therefore mediates plant growth and development as well as biotic and abiotic stresses. Here, we reported the <italic>CPK</italic> gene family of 40 different plant species (950 <italic>CPK</italic> genes) and provided a unified nomenclature system for all of them. In addition, we analyzed their genomic, biochemical and structural conserved features. Multiple sequence alignment revealed that the kinase domain, auto-inhibitory domain and EF-hands regions of regulatory domains are highly conserved in nature. Additionally, the EF-hand domains of higher plants were found to contain four D-x-D and two D-E-L motifs, while lower eukaryotic plants had two D-x-D and one D-x-E motifs in their EF-hands. Phylogenetic analysis showed that <italic>CPK</italic> genes are clustered into four different groups. By studying the <italic>CPK</italic> gene family across the plant lineage, we provide the first evidence of the presence of D-x-D motif in the calcium binding EF-hand domain of CPK proteins.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Akashi, H" uniqKey="Akashi H">H. Akashi</name></author><author><name sortKey="Gojobori, T" uniqKey="Gojobori T">T. Gojobori</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Aravind, L" uniqKey="Aravind L">L. Aravind</name></author><author><name sortKey="Mazumder, R" uniqKey="Mazumder R">R. Mazumder</name></author><author><name sortKey="Vasudevan, S" uniqKey="Vasudevan S">S. 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Mohanta</name></noRegion><name sortKey="Bae, Hanhong" sort="Bae, Hanhong" uniqKey="Bae H" first="Hanhong" last="Bae">Hanhong Bae</name></country><country name="Inde"><noRegion><name sortKey="Mohanta, Nibedita" sort="Mohanta, Nibedita" uniqKey="Mohanta N" first="Nibedita" last="Mohanta">Nibedita Mohanta</name></noRegion><name sortKey="Mohanta, Yugal K" sort="Mohanta, Yugal K" uniqKey="Mohanta Y" first="Yugal K." last="Mohanta">Yugal K. Mohanta</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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